MmuEX6002862 @ mm10
Exon Skipping
Gene
ENSMUSG00000029757 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:MGI Symbol;Acc:MGI:107743]
Coordinates
chr6:5767030-5784498:+
Coord C1 exon
chr6:5767030-5767144
Coord A exon
chr6:5769734-5769791
Coord C2 exon
chr6:5784439-5784498
Length
58 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTCTTCGAAATCAGTGA
3' ss Score
5.07
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAGATATGCAGCAAAAGAAAGAGCCCGTTCAAGATGACTCCGATCTGGATCGCAAACGACGGGAGACAGAAGCTTTGCTTCAGAGCATTGGCATATCACCGGAGCCCCCTCTAG
Seq A exon
TGAGCACTCCCAGTGATGCTGGAAGCCAAGACTCGGGCGATCTGGGGCCATTAACAAG
Seq C2 exon
GACCCTGCAGTGGGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029757-'11-13,'11-10,12-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=0.882 C2=0.861
Domain overlap (PFAM):
C1:
PF0099215=Troponin=FE(8.7=100)
A:
NO
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCGTTCAAGATGACTCC
R:
TGAGTCTGACTGCAGCTGGAG
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types