MmuEX6002862 @ mm9
Exon Skipping
Gene
ENSMUSG00000029757 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:MGI Symbol;Acc:MGI:107743]
Coordinates
chr6:5717030-5734498:+
Coord C1 exon
chr6:5717030-5717144
Coord A exon
chr6:5719701-5719791
Coord C2 exon
chr6:5734439-5734498
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTTATTTTCATTATTTAGTCC
3' ss Score
7.03
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAGATATGCAGCAAAAGAAAGAGCCCGTTCAAGATGACTCCGATCTGGATCGCAAACGACGGGAGACAGAAGCTTTGCTTCAGAGCATTGGCATATCACCGGAGCCCCCTCTAG
Seq A exon
TCCCAACCCCTATGTCTCCCTCTTCGAAATCAGTGAGCACTCCCAGTGATGCTGGAAGCCAAGACTCGGGCGATCTGGGGCCATTAACAAG
Seq C2 exon
GACCCTGCAGTGGGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029757-'4-6,'4-4,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.921 C2=0.937
Domain overlap (PFAM):
C1:
PF044177=DUF501=FE(7.4=100),PF0099215=Troponin=FE(8.7=100)
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCAAAAGAAAGAGCCC
R:
AAGTTCTGAGTCTGACTGCAGC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: