MmuALTA0005945-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000029757 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:MGI Symbol;Acc:MGI:107743]
Coordinates
chr6:5717030-5719791:+
Coord C1 exon
chr6:5717030-5717144
Coord A exon
chr6:5719701-5719733
Coord C2 exon
chr6:5719734-5719791
Length
33 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
CTGTTATTTTCATTATTTAGTCC
3' ss Score
7.03
Exon sequences
Seq C1 exon
GCAGATATGCAGCAAAAGAAAGAGCCCGTTCAAGATGACTCCGATCTGGATCGCAAACGACGGGAGACAGAAGCTTTGCTTCAGAGCATTGGCATATCACCGGAGCCCCCTCTAG
Seq A exon
TCCCAACCCCTATGTCTCCCTCTTCGAAATCAG
Seq C2 exon
TGAGCACTCCCAGTGATGCTGGAAGCCAAGACTCGGGCGATCTGGGGCCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029757-4-5,4-4,4-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=NA C2=0.846
Domain overlap (PFAM):
C1:
PF044177=DUF501=FE(7.4=100),PF0099215=Troponin=FE(8.7=100)
A:
NA
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGGGAGACAGAAGCTTTG
R:
TTGTTAATGGCCCCAGATCGC
Band lengths:
115-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: