Special

MmuALTA0005945-1/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000029757 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:MGI Symbol;Acc:MGI:107743]
Coordinates
chr6:5717030-5719791:+
Coord C1 exon
chr6:5717030-5717144
Coord A exon
NA
Coord C2 exon
chr6:5719734-5719791
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
GTCTCCCTCTTCGAAATCAGTGA
3' ss Score
5.07
Exon sequences
Seq C1 exon
GCAGATATGCAGCAAAAGAAAGAGCCCGTTCAAGATGACTCCGATCTGGATCGCAAACGACGGGAGACAGAAGCTTTGCTTCAGAGCATTGGCATATCACCGGAGCCCCCTCTAG
Seq A exon
NA
Seq C2 exon
TGAGCACTCCCAGTGATGCTGGAAGCCAAGACTCGGGCGATCTGGGGCCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029757-4-5,4-4,4-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.962 A=NA C2=0.846
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF044177=DUF501=FE(7.4=100),PF0099215=Troponin=FE(8.7=100)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000111218





     
                   









    
Main Skipping Isoform:
ENSMUSP00000111217





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000111216, ENSMUSP00000111221
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr7:95442590-95442591 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr4:13001200-13001257 
LOW PSI
BtaALTA0009941-1/3
(DYNC1I1)
Chicken
(galGal4)
chr2:24090746-24090747 
ALTERNATIVE
GgaALTA0005127-1/3
(DYNC1I1)
Chicken
(galGal3)
chr2:23923470-23923527 
ALTERNATIVE
GgaALTA0005127-1/3
(DYNC1I1)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGACGGGAGACAGAAGCTTTG

				
R: 
TTGTTAATGGCCCCAGATCGC

				
Band lengths: 
115-148

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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