GgaEX1021291 @ galGal4
Exon Skipping
Gene
ENSGALG00000009722 | DYNC1I1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:2963]
Coordinates
chr2:24087892-24111890:+
Coord C1 exon
chr2:24087892-24088006
Coord A exon
chr2:24090715-24090805
Coord C2 exon
chr2:24111775-24111890
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTTATTTTCATTATTTAGTCC
3' ss Score
7.03
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGATCTACAGCAAAAGAAGGAGCCAGCTCAAGAAGATTCTGACCTAGACCGCAAGAGAAGAGAGACAGAAGCTTTGTTGCAGAGCATTGGCATATCCCCAGAACCACCTCTAG
Seq A exon
TCCCAACCCCTATGTCTCCCTCTTCGAAATCAGTGAGCACACCCAGTGATGCAGGCAGCCAGGACTCTGGAGATCTGGGACCCATAGGAAG
Seq C2 exon
ACGCAGACTGCACAAACTAGGGGTGTCAAAGATTACCCAGGTTGATTTCTTACCTCGGGAGGTGGTATCCTACTCCAAGGAGACCCAGACACCTCTTGCCACACATCAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009722_MULTIEX1-2/3=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.600
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(27.3=100)
A:
PF0076914=ERM=FE(21.6=100)
C2:
PF0076914=ERM=PD(10.1=35.0),PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAAGAAGGAGCCAGCTC
R:
GGAGTAGGATACCACCTCCCG
Band lengths:
181-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]