GgaEX6019041 @ galGal4
Exon Skipping
Gene
ENSGALG00000009722 | DYNC1I1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:2963]
Coordinates
chr2:24107337-24168350:+
Coord C1 exon
chr2:24107337-24107396
Coord A exon
chr2:24111775-24111890
Coord C2 exon
chr2:24168261-24168350
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTGTTCAATCTTAGACG
3' ss Score
7.86
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GACCTTGCAATGGGACACAGACCCCTCAGTGCTGCAGCTCCAGTCTGACTCTGAACTTGG
Seq A exon
ACGCAGACTGCACAAACTAGGGGTGTCAAAGATTACCCAGGTTGATTTCTTACCTCGGGAGGTGGTATCCTACTCCAAGGAGACCCAGACACCTCTTGCCACACATCAATCTGAAG
Seq C2 exon
AGGATGAAGATGATGAAGAAATGGTGGAACCGAAAGCACAGGATGACTTGGAGACGGAAAATCAAGACCAGAAGCAGGAAACAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009722-'4-14,'4-8,6-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.600 C2=1.000
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(14.4=100),PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF0076914=ERM=PD(10.1=35.0),PF115403=Dynein_IC2=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACACAGACCCCTCAGT
R:
TCTTTTGTTTCCTGCTTCTGGTCT
Band lengths:
138-254
Functional annotations
There are 1 annotated functions for this event
PMID: 11148209
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: circular dichroism, competition binding, mutation analysis, nuclear magnetic resonance, pull down. ELM ID: ELMI000092; ELM sequence: YSKETQT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]