GgaEX0014398 @ galGal4
Exon Skipping
Gene
ENSGALG00000009722 | DYNC1I1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:2963]
Coordinates
chr2:24090715-24111890:+
Coord C1 exon
chr2:24090715-24090805
Coord A exon
chr2:24107337-24107396
Coord C2 exon
chr2:24111775-24111890
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACGGCTGATTACCACCCTAGGAC
3' ss Score
5.97
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
TCCCAACCCCTATGTCTCCCTCTTCGAAATCAGTGAGCACACCCAGTGATGCAGGCAGCCAGGACTCTGGAGATCTGGGACCCATAGGAAG
Seq A exon
GACCTTGCAATGGGACACAGACCCCTCAGTGCTGCAGCTCCAGTCTGACTCTGAACTTGG
Seq C2 exon
ACGCAGACTGCACAAACTAGGGGTGTCAAAGATTACCCAGGTTGATTTCTTACCTCGGGAGGTGGTATCCTACTCCAAGGAGACCCAGACACCTCTTGCCACACATCAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009722_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.600
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(21.6=100)
A:
PF0076914=ERM=FE(14.4=100),PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF0076914=ERM=PD(10.1=35.0),PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
ENSGALT00000015824fB7010
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATCAGTGAGCACACCCA
R:
GGAGTAGGATACCACCTCCCG
Band lengths:
143-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]