HsaEX0021278 @ hg19
Exon Skipping
Gene
ENSG00000158560 | DYNC1I1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:HGNC Symbol;Acc:2963]
Coordinates
chr7:95442508-95499310:+
Coord C1 exon
chr7:95442508-95442649
Coord A exon
chr7:95457369-95457428
Coord C2 exon
chr7:95499195-95499310
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGCTGCACAATTAGGAC
3' ss Score
5.6
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
TGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGATCTGGGGCCATTAACAAG
Seq A exon
GACCCTGCAGTGGGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGG
Seq C2 exon
AAGAAGACTGCATAAACTGGGCGTGTCAAAGGTCACCCAAGTGGATTTCCTGCCAAGGGAAGTAGTGTCCTACTCAAAGGAGACCCAGACTCCTCTTGCCACGCATCAGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158560_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=0.930 C2=0.500
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATCTGGGGCCATTAACAA
R:
TTCAGACTGATGCGTGGCAAG
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)