BtaEX0012216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027134 | DYNC1I1
Description
Bos taurus dynein, cytoplasmic 1, intermediate chain 1 (DYNC1I1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046516]
Coordinates
chr4:13001167-13039450:+
Coord C1 exon
chr4:13001167-13001257
Coord A exon
chr4:13017145-13017204
Coord C2 exon
chr4:13039335-13039450
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGCTGCGCGATTAGGAC
3' ss Score
5.7
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
TCCCAACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGACCTGGGACCGTTGACAAG
Seq A exon
GACCCTGCAGTGGGACACAGACCCCTCAGTGCTGCAGCTGCAGTCAGACTCAGAACTTGG
Seq C2 exon
ACGGAGACTGCATAAGCTGGGCGTGTCGAAGATCACCCAAGTGGATTTCCTGCCCAGGGAGGTAGTGTCCTACTCCAAGGAGACCCAGACTCCTCTGGCCACACATCAGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027134_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.650
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Inclusion Isoform:
ENSBTAT00000020774fB2305
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCCTATGTCTCCCTCC
R:
CTGGGCAGGAAATCCACTTGG
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development