MmuEX0015952 @ mm10
Exon Skipping
Gene
ENSMUSG00000029757 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:MGI Symbol;Acc:MGI:107743]
Coordinates
chr6:5769734-5800890:+
Coord C1 exon
chr6:5769734-5769791
Coord A exon
chr6:5784439-5784498
Coord C2 exon
chr6:5800775-5800890
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGCTGCACGATTAGGAC
3' ss Score
4.68
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
TGAGCACTCCCAGTGATGCTGGAAGCCAAGACTCGGGCGATCTGGGGCCATTAACAAG
Seq A exon
GACCCTGCAGTGGGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGG
Seq C2 exon
GAGACGACTGCACAAGCTGGGCGTGTCAAAGGTGACCCAGGTGGATTTCCTGCCTAGGGAAGTAGTATCCTACTCCAAGGAGACACAGACTCCTCTTGCAACACATCAGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029757_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.861 C2=0.504
Domain overlap (PFAM):
C1:
NO
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGGAAGCCAAGACTCG
R:
GGAGTCTGTGTCTCCTTGGAGT
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types