GgaEX0014398 @ galGal3
Exon Skipping
Gene
ENSGALG00000009722 | DYNC1I1
Description
NA
Coordinates
chr2:23923386-23944615:+
Coord C1 exon
chr2:23923386-23923527
Coord A exon
chr2:23940062-23940121
Coord C2 exon
chr2:23944500-23944615
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACGGCTGATTACCACCCTAGGAC
3' ss Score
5.97
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
TGCAGTCGCTGCATGTGTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCTTCGAAATCAGTGAGCACACCCAGTGATGCAGGCAGCCAGGACTCTGGAGATCTGGGACCCATAGGAAG
Seq A exon
GACCTTGCAATGGGACACAGACCCCTCAGTGCTGCAGCTCCAGTCTGACTCTGAACTTGG
Seq C2 exon
ACGCAGACTGCACAAACTAGGGGTGTCAAAGATTACCCAGGTTGATTTCTTACCTCGGGAGGTGGTATCCTACTCCAAGGAGACCCAGACACCTCTTGCCACACATCAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009722_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.952 C2=0.575
Domain overlap (PFAM):
C1:
NO
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATCAGTGAGCACACCCA
R:
GGAGTAGGATACCACCTCCCG
Band lengths:
143-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]