RnoEX0030323 @ rn6
Exon Skipping
Gene
ENSRNOG00000009700 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:RGD Symbol;Acc:2512]
Coordinates
chr4:30853713-30892056:+
Coord C1 exon
chr4:30853713-30853848
Coord A exon
chr4:30868775-30868834
Coord C2 exon
chr4:30891941-30892056
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGCTGCGCAATTAGGAC
3' ss Score
5.9
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
TGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCTTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACGATCTGGGGCCATTAACAAG
Seq A exon
GACCCTGCAGTGGGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGG
Seq C2 exon
GAGAAGACTGAACAAGCTGGGCGTGTCAAAGGTTACCCAGGTGGATTTCCTGCCTAGGGAGGTGGTATCCTACTCCAAGGAGACACAGACTCCTCTTGCAACTCATCAGTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009700_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.857 C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACCCCTATGTCTCCCTC
R:
CCTCCCTAGGCAGGAAATCCA
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]