BtaEX6026325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027134 | DYNC1I1
Description
Bos taurus dynein, cytoplasmic 1, intermediate chain 1 (DYNC1I1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046516]
Coordinates
chr4:13001167-13168786:+
Coord C1 exon
chr4:13001167-13001257
Coord A exon
chr4:13039335-13039450
Coord C2 exon
chr4:13168697-13168786
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTGTACTTCGTTACTTCCAGACG
3' ss Score
7.51
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCCCAACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGACCTGGGACCGTTGACAAG
Seq A exon
ACGGAGACTGCATAAGCTGGGCGTGTCGAAGATCACCCAAGTGGATTTCCTGCCCAGGGAGGTAGTGTCCTACTCCAAGGAGACCCAGACTCCTCTGGCCACACATCAGTCTGAAG
Seq C2 exon
AGGATGAGGATGATGAAGAAATGGTGGAACCTAAAGGGGACCAGGATTCAGAACAGGAAAATGAAGACAAAAAGCAGGAGGTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027134-'10-13,'10-10,12-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.650 C2=1.000
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACCCCTATGTCTCCCTC
R:
TCCTTCACCTCCTGCTTTTTGT
Band lengths:
178-294
Functional annotations
There are 1 annotated functions for this event
PMID: 11148209
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: circular dichroism, competition binding, mutation analysis, nuclear magnetic resonance, pull down. ELM ID: ELMI000092; ELM sequence: YSKETQT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]