DreEX6040872 @ danRer10
Exon Skipping
Gene
ENSDARG00000060948 | dync1i1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
Coordinates
chr16:25408990-25412182:+
Coord C1 exon
chr16:25408990-25409049
Coord A exon
chr16:25409877-25409992
Coord C2 exon
chr16:25412096-25412182
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGCTTACTCTCTTAGGTG
3' ss Score
7.51
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GACGTTGCAGTGGGACACTGACCCCTCAGCTCTTCAGCTTCTTGCAGATTCTGTTCATGG
Seq A exon
GTGCAGGATGCAGAGGCTTGGAGCATCAAAAATTGTTCAGATTGATTTCATGCCAAAAGAGCTGGTGACATACTCTAAAGAGACACAGACCCCTGTCGCATCAAATCAGCCTGAAG
Seq C2 exon
AAGAAGACGATGAGGAGCTGTCAGTGCCCAAATCTGAGCCGGCGTCACAACAGCTGGAAGAGGAGAAAACTCAGGAAGTAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060948-'6-10,'6-8,7-10=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=0.425 C2=1.000
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCTCAGCTCTTCAG
R:
CTTCTTCTACTTCCTGAGTTTTCTCC
Band lengths:
130-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]