RnoEX0030326 @ rn6
Exon Skipping
Gene
ENSRNOG00000009781 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:RGD Symbol;Acc:620174]
Coordinates
chr3:57832689-57849545:+
Coord C1 exon
chr3:57832689-57832779
Coord A exon
chr3:57840091-57840206
Coord C2 exon
chr3:57849450-57849545
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATCTATATTCACTTATTTAGACG
3' ss Score
5.08
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCCCTCCTCCCATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAG
Seq A exon
ACGAGGACCTATTAAACTTGGAATGGCCAAAATTACTCAAGTCGACTTTCCCCCTCGAGAAATCGTCACATATACAAAGGAAACTCAGACCCCGGTTACAGCTCAACCCAAAGAAG
Seq C2 exon
ATGAGGAGGAGGAAGATGACGTAGCAGCTCCTAAGCCTCCTGTTGAACCTGAAGAAGAGAAAATTTTAAAAAAAGACGAAGAGAATGATAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009781-'15-16,'15-12,20-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTCCCATGTCTCCATC
R:
CTTTGCTATCATTCTCTTCGTCTT
Band lengths:
186-302
Functional annotations
There are 1 annotated functions for this event
PMID: 17551010
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001218; ELM sequence: YTKETQT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]