GgaEX1021300 @ galGal4
Exon Skipping
Gene
ENSGALG00000009551 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001006519]
Coordinates
chr7:17468432-17479149:-
Coord C1 exon
chr7:17479059-17479149
Coord A exon
chr7:17474534-17474649
Coord C2 exon
chr7:17468432-17468521
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTCTATTAATTTTATGTAGACG
3' ss Score
6.07
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
TCCCTCCTCCTACCTCTCCGTCTTCCAAATCCGTGAGTACGCCAAGCGAGGCTGGGAGCCAGGACTCCGGTGATGGCGCCGTTGGATCCAG
Seq A exon
ACGTGGACCTGTTAAACTTGGAATGGCCAAAATCACACAAGTTGACTTTCCTCCTCGGGAAATTGTTACATATACGAAGGAGACACAAACACCTGTTATGACTCAGCCGAAGGAAG
Seq C2 exon
ATGAGGAAGAAGAAGATGATGTGGTTGCGCCAAAGCCGTTAGTTGAGCCTGAGGAAGTAAAAACATTCAAAAAGGAAGAGGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.950 C2=1.000
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCTACCTCTCCGTCT
R:
TTCCTCCTCCTCTTCCTTTTTGA
Band lengths:
178-294
Functional annotations
There are 1 annotated functions for this event
PMID: 17551010
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001218; ELM sequence: YTKETQT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]