BtaEX0012219 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002646 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001069351]
Coordinates
chr2:24828423-24846914:-
Coord C1 exon
chr2:24846824-24846914
Coord A exon
chr2:24838874-24838989
Coord C2 exon
chr2:24828423-24828518
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTCACTTTATTTAGACG
3' ss Score
5.78
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCCCTCCTCCTATGTCTCCATCCTCCAAATCTGTGAGCACACCAAGCGAAGCTGGGAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAG
Seq A exon
ACGAGGACCTATTAAACTTGGAATGGCTAAAATTACACAAGTTGACTTTCCTCCTCGTGAAATTGTCACATACACAAAGGAAACTCAGACTCCAGTTATGGCTCAACCCAAAGAAG
Seq C2 exon
ATGAAGAAGAAGAAGATGACGTGGTGACTCCTAAGCCACCTATTGAACCTGAGGAAGAGAAAACTTTAAAGAAAGATGAAGAAAGTGATAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002646-'10-14,'10-12,12-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.942 C2=1.000
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTCCTATGTCTCCATCC
R:
TCTTTAAAGTTTTCTCTTCCTCAGGT
Band lengths:
162-278
Functional annotations
There are 1 annotated functions for this event
PMID: 17551010
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001218; ELM sequence: YTKETQT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development