MmuEX6102088 @ mm9
Exon Skipping
Gene
ENSMUSG00000027012 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
Coordinates
chr2:71066657-71084841:+
Coord C1 exon
chr2:71066657-71066747
Coord A exon
chr2:71073972-71074087
Coord C2 exon
chr2:71084746-71084841
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTTATATTCACTTATTTAGACG
3' ss Score
5.34
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCCCTCCTCCTATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGATTCTGGAGATGGCGCCGTGGGATCTAG
Seq A exon
ACGAGGACCTATTAAACTTGGAATGGCCAAAATTACTCAAGTTGACTTTCCCCCTCGAGAAATCGTCACATACACAAAGGAAACTCAGACCCCGGTTACAGCTCAACCCAAAGAAG
Seq C2 exon
ATGAGGAGGAGGAAGATGATGTAGCAACTCCTAAACCTCCTGTTGAACCTGAAGAAGAGAAAACTTTGAAAAAAGACGAAGAGAATGATAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027012-'5-15,'5-11,8-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.945 C2=1.000
Domain overlap (PFAM):
C1:
PF111503=DUF2927=PD(6.3=16.1),PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=WD(100=82.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTCCTATGTCTCCATCC
R:
CTTTGCTATCATTCTCTTCGTCTT
Band lengths:
186-302
Functional annotations
There are 1 annotated functions for this event
PMID: 17551010
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001218; ELM sequence: YTKETQT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: