DreALTA0010332-4/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000060948 | dync1i1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
Coordinates
chr16:25403367-25406325:+
Coord C1 exon
chr16:25403367-25403481
Coord A exon
chr16:25406184-25406267
Coord C2 exon
chr16:25406268-25406325
Length
84 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
3' ss Seq
CTGCCACTGCTGGCCATCAGTGC
3' ss Score
3.57
Exon sequences
Seq C1 exon
TCTGAGATGCTTCAGAGGCCTGAGAATGTGACCGAAGACTCAGATCTAGACAGGAAGAGAAGAGAAACAGAGGCTCTTCTGCAGAGTATTGGCATTTCACCTGAACCACCATTAG
Seq A exon
TGCAGCCACTGCAGCTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCTTCGCAATCAG
Seq C2 exon
TGAGTCCACCCAGCGAAACTGGAAGCCAGGAGTCCATAGATGGAGGGACAGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060948-3-5,3-4,3-3,3-2-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGCTTCAGAGGCCTGA
R:
CTTTCCACTGTCCCTCCATCT
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]