GgaALTA0005043-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009551 | DYNC1I2
Description
NA
Coordinates
chr7:19406925-19409928:-
Coord C1 exon
chr7:19409814-19409928
Coord A exon
chr7:19407016-19407069
Coord C2 exon
chr7:19406925-19407015
Length
54 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
TAATTTGAAAACATCCTAAGCTG
3' ss Score
-1.58
Exon sequences
Seq C1 exon
ACCGATCAGAAGAAGGATATTCTTCCTGTACAAGAAGAATCTGACCTTGAAAAGAAAAGAAGAGAAGCTGAAGCGTTACTTCAGAGCATGGGCTTGACACCGGAGTCTCCTGTTG
Seq A exon
CTGTGCAACCTCTGCGAGTAGTAACAGCGGATACCTGTCTGTTTCACTATTTAG
Seq C2 exon
TCCCTCCTCCTACCTCTCCGTCTTCCAAATCCGTGAGTACGCCAAGCGAGGCTGGGAGCCAGGACTCCGGTGATGGCGCCGTTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTACTTCAGAGCATGGG
R:
GATCCAACGGCGCCATCAC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]