MmuALTA1016333-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000027012 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
Coordinates
chr2:71219301-71228690:+
Coord C1 exon
chr2:71219301-71219418
Coord A exon
chr2:71228546-71228599
Coord C2 exon
chr2:71228600-71228690
Length
54 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TATTTTTGAAACCCCATAAGATG
3' ss Score
-1.43
Exon sequences
Seq C1 exon
ACTGATCAGAAGAAGGAAGCTGCTGTTTCTGTACAAGAAGAGTCTGATCTTGAAAAAAAAAGAAGAGAAGCTGAGGCATTGCTTCAAAGCATGGGACTAACTACGGACTCCCCTATTG
Seq A exon
ATGAGCAACCTCTCTGTGTAGTAACAGCAGATACCTGTCTGTTTCATTATTTAG
Seq C2 exon
TCCCTCCTCCTATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGATTCTGGAGATGGCGCCGTGGGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027012-11-18,11-17,11-16-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGAGGCATTGCTTCA
R:
GCGCCATCTCCAGAATCCTG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types