BtaALTA0009946-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002646 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001069351]
Coordinates
chr2:24846824-24857203:-
Coord C1 exon
chr2:24857086-24857203
Coord A exon
chr2:24846915-24846968
Coord C2 exon
chr2:24846824-24846914
Length
54 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TACTTTTGAAACGTCATAAGCTG
3' ss Score
-2.08
Exon sequences
Seq C1 exon
ACTGATCAGAAGAAGGAAGCAGTTGCTCCTGTGCAAGAAGAATCAGATCTTGAAAAAAAAAGAAGAGAAGCTGAAGCATTGCTTCAAAGCATGGGTCTAACTGCAGAATCCCCCATTG
Seq A exon
CTGAGCAACCTCTGCGTGTAGTAACAGCGGATACCTGTCTATTTCACTATTTAG
Seq C2 exon
TCCCTCCTCCTATGTCTCCATCCTCCAAATCTGTGAGCACACCAAGCGAAGCTGGGAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002646-8-8,8-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTGTGCAAGAAGAATCA
R:
CGCTTGGTGTGCTCACAGATT
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development