HsaALTA1006529-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000077380 | DYNC1I2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:HGNC Symbol;Acc:HGNC:2964]
Coordinates
chr2:171692777-171707377:+
Coord C1 exon
chr2:171692777-171692894
Coord A exon
NA
Coord C2 exon
chr2:171707233-171707377
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TATTTTTGAAACGTCATAAGCTG
3' ss Score
-1.67
Exon sequences
Seq C1 exon
ACAGACCAGAAGAAGGAAGCTGTTGCTCCTGTGCAAGAAGAATCAGATCTTGAAAAAAAAAGGAGAGAAGCTGAAGCATTGCTTCAAAGCATGGGGCTAACTCCAGAATCCCCCATTG
Seq A exon
NA
Seq C2 exon
CTGAGCAACCTCTCCGTGTAGTAACAGCGGATACCTGTCTATTTCACTATTTAGTCCCTCCTCCTATGTCTCCATCCTCCAAATCTGTGAGCACTCCAAGTGAAGCTGGAAGCCAAGACTCTGGAGATGGCGCCGTGGGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077380-16-25,16-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=NA C2=0.854
Domain overlap (PFAM):
C1:
PF142651=DUF4355=FE(44.3=100)
A:
NA
C2:
PF142651=DUF4355=PD(13.6=24.5),PF115403=Dynein_IC2=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCAGAAGAAGGAAGCTGT
R:
CTAGATCCCACGGCGCCATC
Band lengths:
262-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains