GgaALTA0005043-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009551 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001006519]
Coordinates
chr7:17479059-17482063:-
Coord C1 exon
chr7:17481949-17482063
Coord A exon
chr7:17479150-17479203
Coord C2 exon
chr7:17479059-17479149
Length
54 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
TAATTTGAAAACATCCTAAGCTG
3' ss Score
-1.58
Exon sequences
Seq C1 exon
ACCGATCAGAAGAAGGATATTCTTCCTGTACAAGAAGAATCTGACCTTGAAAAGAAAAGAAGAGAAGCTGAAGCGTTACTTCAGAGCATGGGCTTGACACCGGAGTCTCCTGTTG
Seq A exon
CTGTGCAACCTCTGCGAGTAGTAACAGCGGATACCTGTCTGTTTCACTATTTAG
Seq C2 exon
TCCCTCCTCCTACCTCTCCGTCTTCCAAATCCGTGAGTACGCCAAGCGAGGCTGGGAGCCAGGACTCCGGTGATGGCGCCGTTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551-9-9,9-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTACTTCAGAGCATGGG
R:
GATCCAACGGCGCCATCAC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]