DreEX0029283 @ danRer10
Exon Skipping
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14563760-14565871:-
Coord C1 exon
chr21:14565726-14565871
Coord A exon
chr21:14564159-14564302
Coord C2 exon
chr21:14563760-14563986
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTGTTTTGGGAGTAGCTG
3' ss Score
2.2
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGCTTCAGGGTCATTGCAGAGCACAGATGCAGACATGGTGCAGGAACTGCCTCTATGCAGCTGTCGAATGGAGACACCCAAGAGTCGAGAGATCCTCACGCTTGCGGACAGGAAGTGTATGGCAACTGAGAGCATTGACGGCCAG
Seq A exon
CTGAGCCGTTGTCAGAGTGCAGTGCTGAAGCACGAGATGATGAGGCCTTCAAATTCTGTCCAACTGCTGGTTCTGTGTGAGGACCATCGCACAGGCATGGTCAAGCATCAGTGCTGCCCTGGCTGTGGCTTCTTTTGCAGAGCC
Seq C2 exon
GGTACCTTCATGGAGTGTCAGCCAGAGGTGAACATCTCCCACCGCTTCCATCGGACCTGTGCCTCGGTACTTAATGGGCAGAGCTTTTGTCCACATTGTGGAGAGGAAGTCAGCAAGGCGAAAGAGGTCACCATTGCCAAGGCAGATACAACGTCAACTGTACCCATCACCCATAGCTCCTGCATACCCAGCACCTCAGAGGGCAAAGCGGACACTACCACTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.000 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGAGAGATCCTCACGCT
R:
TGCTGGGTATGCAGGAGCTAT
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]