DreEX0030074 @ danRer10
Exon Skipping
Gene
ENSDARG00000045066 | entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-58]
Coordinates
chr12:30628611-30635951:-
Coord C1 exon
chr12:30635739-30635951
Coord A exon
chr12:30628827-30628934
Coord C2 exon
chr12:30628611-30628748
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGCCGTTTGACTTTCTAGGCT
3' ss Score
9.53
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
CCCGCAGGCACTCTTGGAGCTCTGGACCTTGGTGGAGCCTCTACTCAAATAACCTTCGTACCTCAGCAGATTATTGAATCATCTGACAATTCGATTGACTTCAGACTGTATGGAAATGATTATCATCTATACACCCACAGCTTTCTCTGCTATGGGAAGGACCAAGCTCTCAAGCTTGCTATGGCTGAGAAATTGCGCTCAACACCTGACAAG
Seq A exon
GCTTTTTCTGCTTTCTTCTTTGTAATGGACTTTTTAAATCTGACAAACGATTCATTAGACAAAACAAAGCAGAGGCTGGCAATGTACTGCTCTACCCCATGGCAAAAG
Seq C2 exon
ATTGTACAAGATCACCCAAAAGTAAAAGAGAAGTACCTTTCTGAATACTGCTTCTCAGCAACATACATTCTCACTCTCCTGGAACATGGATACAATTTCACCTCAGACAACTGGAACGACATCAAGTTTATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045066_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(16.7=100)
A:
PF0115012=GDA1_CD39=FE(8.3=100)
C2:
PF0115012=GDA1_CD39=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGGTGGAGCCTCTACTC
R:
TGTATGTTGCTGAGAAGCAGT
Band lengths:
255-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]