GgaEX6040605 @ galGal3
Exon Skipping
Gene
ENSGALG00000007078 | F1P328_CHICK
Description
NA
Coordinates
chr6:23441437-23442525:+
Coord C1 exon
chr6:23441437-23441697
Coord A exon
chr6:23442181-23442297
Coord C2 exon
chr6:23442505-23442525
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTAAAATACTCTCTTTCAGGCC
3' ss Score
7.64
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCACAGAGAACAGCAGCCTCTTTGATCCGTGCTTTCACCAAGGATATCAGAGAACTATAAGTGTCAGCAATTTCTTCAAAAACCCCTGTACGTCAGTCGAGAAAAAACAATTCCCTTTCAGCCAGCTGCATATTGAAGGAGAGGGGAATTATGAAAAATGCCGAAGAAACATCCAGAATCTCTTTAACAAAACCGACTGTCCTTACTCCAGCTGCTCCTTCAATGGGATATATCTACCTCCATTACAGGGGGACTTTGGG
Seq A exon
GCCTTTTCTGCTTTCTACTTTGTGATGAACTTTTTGAACCTGACAAGTGATGACCCCTTCACCTTGGACGAAGTGGCCAGTGCTATTAAGAAATTCTGCGCCCGACCTTGGCATGAG
Seq C2 exon
GTGAAGCTACAGTATCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
86%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(19.7=100)
A:
PF0115012=GDA1_CD39=FE(8.7=100)
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]