GgaEX6040605 @ galGal4
Exon Skipping
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21575988-21577193:+
Coord C1 exon
chr6:21575988-21576248
Coord A exon
chr6:21576732-21576848
Coord C2 exon
chr6:21577056-21577193
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTAAAATACTCTCTTTCAGGCC
3' ss Score
7.64
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCACAGAGAACAGCAGCCTCTTTGATCCGTGCTTTCACCAAGGATATCAGAGAACTATAAGTGTCAGCAATTTCTTCAAAAACCCCTGTACGTCAGTCGAGAAAAAACAATTCCCTTTCAGCCAGCTGCATATTGAAGGAGAGGGGAATTATGAAAAATGCCGAAGAAACATCCAGAATCTCTTTAACAAAACCGACTGTCCTTACTCCAGCTGCTCCTTCAATGGGATATATCTACCTCCATTACAGGGGGACTTTGGG
Seq A exon
GCCTTTTCTGCTTTCTACTTTGTGATGAACTTTTTGAACCTGACAAGTGATGACCCCTTCACCTTGGACGAAGTGGCCAGTGCTATTAAGAAATTCTGCGCCCGACCTTGGCATGAG
Seq C2 exon
GTGAAGCTACAGTATCATCAAATAAAAGAAAAGTACCTGAGTGAATATTGCTTTTCTGGAGCCTACATCCTCTCCCTACTGGAAAATGGCTATGAATTCACTACAGAAAACTGGAAAAGGATCCACTTCCTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(19.8=100)
A:
PF0115012=GDA1_CD39=FE(8.7=100)
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCCTGTACGTCAGTCGA
R:
GGGAGAGGATGTAGGCTCCAG
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]