Special

MmuEX6032751 @ mm10

Exon Skipping

Gene
ENSMUSG00000048120 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:MGI Symbol;Acc:MGI:102805]
Coordinates
chr19:40727288-40736884:+
Coord C1 exon
chr19:40727288-40727548
Coord A exon
chr19:40733667-40733786
Coord C2 exon
chr19:40736750-40736884
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTCTGTTCCACAGGCG
3' ss Score
11.41
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTCAAGTGGTGGCGTCCTTAAGGACCCATGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG
Seq A exon
GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG
Seq C2 exon
ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048120-'27-28,'27-26,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.011 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0115012=GDA1_CD39=FE(19.9=100)

							
A:
PF0115012=GDA1_CD39=FE(19.3=100)

							
C2:
PF0115012=GDA1_CD39=FE(10.2=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000116285





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000107850, ENSMUSP00000116895
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr10:95860469-95860582 
HIGH PSI
HsaEX1013149
(ENTPD1)
Human
(hg19)
chr10:97620226-97620339 
Rat
(rn6)
chr1:259808438-259808557 
Cow
(bosTau6)
chr26:17142466-17142582 
HIGH PSI
BtaEX6099909
(ENTPD1)
Chicken
(galGal4)
chr6:21576732-21576848 
HIGH PSI
GgaEX6040605
(ENTPD1)
Chicken
(galGal3)
chr6:23442181-23442297 
HIGH PSI
GgaEX6040605
(F1P328_CHICK)
Zebrafish
(danRer10)
chr12:30628827-30628934 
HIGH PSI
DreEX0030074
(entpd1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGTTTCGAATCCAGGGCACTG

				
R: 
TTCCCAGGAGCTGTCTGTGAA

				
Band lengths: 
251-371

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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