DreEX0030974 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29049409-29052481:-
Coord C1 exon
chr6:29052421-29052481
Coord A exon
chr6:29051687-29051740
Coord C2 exon
chr6:29049409-29049540
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTGACACTTTTTGTTTCAGAGA
3' ss Score
8.72
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATTGGAAAAGGAGTACACTACAATCAAAACAAAGGAGATGGAGGAACAGGTGGAGATCAAG
Seq A exon
AGACTACGCACAGAAAACAGACTTCTGAAGCAGCGAATAGACACTCTGGAGAAA
Seq C2 exon
AAGGGGAATCCACGCTACACAGAGGAGTCCATCCTTCAGTTGGAGAGAGAACTGGTGCAGGCCCGTCTAAAGGAGGCTGAGTCTCAGTGTGCACTAAAAGAGATGCAGGACAAGATACTCTATATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'24-22,'24-18,25-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.037 C2=0.114
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(17.9=100)
A:
PF138511=GAS=FE(15.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATGGAGGAACAGGTGG
R:
TCCTGCATCTCTTTTAGTGCACA
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]