RnoEX0033420 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2955853-2977813:+
Coord C1 exon
chr14:2955853-2955913
Coord A exon
chr14:2960528-2960581
Coord C2 exon
chr14:2977679-2977813
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTCTTGGCAGAGG
3' ss Score
9.65
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAGCAAGGTGAAATTAAA
Seq A exon
AGGTTACGCACAGAAAACAGGCTTTTAAAACAGCGCATTGAAACACTAGAAAAA
Seq C2 exon
CATAAATGCAGTTCCACCTACAACGAAGATTTTGTGCTGCAGTTGGAGAAGGAGTTGGTCCAAGCCAGACTGAGTGAAGCTGAGTCTCAGTGTGCCCTGAAGGAGATGCAGGACAAAGTGCTGGACATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039_MULTIEX3-4/6=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.014 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(90.9=88.9)
Main Skipping Isoform:
ENSRNOT00000061630fB5042
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGGAAGAGCAAGGTGA
R:
ATCTCCTTCAGGGCACACTGA
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]