HsaEX0023362 @ hg38
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92636202-92677218:-
Coord C1 exon
chr1:92677158-92677218
Coord A exon
chr1:92665939-92665992
Coord C2 exon
chr1:92636202-92636336
Length
54 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTTTTTCTTGGCAGAGG
3' ss Score
8
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCTTGAAAAGGAATACACTACAATAAAAACGAAAGAAATGGAAGAGCAAGTTGAAATTAAA
Seq A exon
AGGTTACGCACAGAAAATAGACTTTTAAAACAGCGCATCGAGACATTAGAAAAA
Seq C2 exon
CATAAATGCAGTTCCAACTACAACGAAGATTTTGTGCTACAGCTAGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCATTAAAAGAGATGCAGGATAAAGTCTTGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-'40-97,'40-87,42-97
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(95.3=91.1)
Main Skipping Isoform:
ENST00000540033fB15070
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAAGAAATGGAAGAGCAAGT
R:
TCCTGCATCTCTTTTAATGCACACT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development