MmuEX0017490 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107799126-107813606:-
Coord C1 exon
chr5:107813546-107813606
Coord A exon
chr5:107812358-107812411
Coord C2 exon
chr5:107799126-107799260
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTTTCCTTGGCAGAGG
3' ss Score
9.89
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAACAAGGTGAAATTAAA
Seq A exon
AGGCTACGCACAGAAAATAGGCTTTTAAAACAGCGCATTGAAACATTAGAAAAA
Seq C2 exon
CATAAATGCAGTTCCACCTACAACGAAGATTTCGTGCTGCAGCTGGAGAAGGAATTGGTTCAAGCCAGACTGAGTGAAGCCGAGTCTCAGTGTGCACTGAAGGAGATGCAGGATAAAGTGTTGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-'46-45,'46-36,47-45
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.093 C2=0.078
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(18.3=100)
A:
PF138511=GAS=FE(15.6=100)
C2:
PF065706=DUF1129=PU(90.9=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATGGAAGAACAAGGTGAAA
R:
TGCATCTCCTTCAGTGCACAC
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types