DreEX0031164 @ danRer10
Exon Skipping
Gene
ENSDARG00000028688 | exosc2
Description
exosome component 2 [Source:ZFIN;Acc:ZDB-GENE-050417-27]
Coordinates
chr5:71356718-71357643:+
Coord C1 exon
chr5:71356718-71356783
Coord A exon
chr5:71357224-71357292
Coord C2 exon
chr5:71357467-71357643
Length
69 bp
Sequences
Splice sites
3' ss Seq
TATTCTTTAACGTGTGTAAGGCG
3' ss Score
0.01
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGACGTCGTTCCACGCAGGATGAGCTGGCCATGAGGGATTATCTGCAGGAAGGAGATCTCATCAGT
Seq A exon
GCGGAGGTTCAGTCGATCTTCTCGGACGGCGCTCTCTCTCTGCACACGCGCAGTCTGAAGTACGGCAAG
Seq C2 exon
CTGGGTCAGGGTGTGCTGGTGTATGTGTCTCCGTCGCTGGTGAAGAGGCAGAAGACACACTTCCACAATCTGCCCTGCGGAGCGTCGCTGATCCTGGGGAACAATGGATACGTGTGGCTGAGTCCCACACCGGCACTGCAGGAGGAGCAGGCCGGAGGATTCTACACCAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028688-'5-10,'5-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGCCATGAGGGATTA
R:
GGACTCAGCCACACGTATCCA
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]