MmuEX7000856 @ mm10
Exon Skipping
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31675839-31678627:+
Coord C1 exon
chr2:31675839-31675904
Coord A exon
chr2:31676668-31676736
Coord C2 exon
chr2:31678451-31678627
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCATCACATGAGTAGGCG
3' ss Score
2.01
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGGAGAAGGTCTGCGGAGGATGAGCTGGCCATGAGAGGCTTCTTGCAGGAAGGCGACCTCATCAGT
Seq A exon
GCGGAGGTCCAGGCTGTGTTCTCGGATGGAGCTGTTTCTCTGCACACGAGGAGCCTGAAATATGGGAAG
Seq C2 exon
CTAGGTCAGGGAGTTTTAGTCCAGGTCTCGCCTTCCCTGGTGAAAAGACAGAAGACTCATTTCCATGACTTGCCATGTGGTGCCTCAGTGATTCTGGGTAACAACGGTTTCATCTGGATCTACCCAACACCTGAGCACAAGGATGAGGATGCTGGGGGCTTCATTGCTAACTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356-'9-10,'9-8,12-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGAGGCTTCTTGCAGG
R:
TGTGCTCAGGTGTTGGGTAGA
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types