GgaEX6015198 @ galGal4
Exon Skipping
Gene
ENSGALG00000003887 | EXOSC2
Description
exosome component 2 [Source:RefSeq peptide;Acc:NP_001012816]
Coordinates
chr17:5965705-5967134:+
Coord C1 exon
chr17:5965705-5965770
Coord A exon
chr17:5965933-5966001
Coord C2 exon
chr17:5966958-5967134
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCTTAAGAGGCACTGACAGGCA
3' ss Score
-5.75
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGAAGGAGATCAGCAGAAGACGAGCTTGCGATGAGGGACTATCTGCAGGAAGGGGACCTCATCAGT
Seq A exon
GCAGAGGTCCAGTCTGTATTTTCTGATGGGGCTGTATCGCTGCACACCAGGAGTCTGAAATACGGGAAG
Seq C2 exon
CTTGGCCAGGGTGTGCTTGTTCAGGTCTCTCCCTCCCTTGTGAAACGCCAGAAGACTCACTTCCATGACTTGCCCTGTGGTGCATCTGTGATCCTCGGCAACAACGGTTTTATCTGGATCTACCCAACTCCAGAACAGAAAGATGAAGAAGCAGGGGGCTTTACAACCAACTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887-'7-8,'7-5,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCAGAAGACGAGCTTGC
R:
AAAACCGTTGTTGCCGAGGAT
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]