RnoEX6016355 @ rn6
Exon Skipping
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10154632-10157283:-
Coord C1 exon
chr3:10157218-10157283
Coord A exon
chr3:10156413-10156481
Coord C2 exon
chr3:10154632-10154808
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCATCACATGAGTAGGCG
3' ss Score
2.01
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGGAGAAGGTCGGCGGAGGATGAGCTGGCCATGAGAGGCTTCTTACAAGAAGGCGACCTCATCAGT
Seq A exon
GCGGAAGTCCAGGCTGTGTTCTCCGATGGAGCTGTTTCTCTGCACACGAGGAGCCTGAAGTACGGAAAG
Seq C2 exon
CTAGGTCAGGGGGCTTTAGTCCAGGTCTCTCCTGCCCTGGTGAAAAGACAGAAGACCCATTTCCATGACTTGCCATGCGGTGCCTCAGTGATTCTGGGTAACAATGGTTTCATCTGGATCTACCCGACACCCGAGCACAAGGACGAGGAGGCAGGGGGCTTCATTGCCAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245-'9-8,'9-7,11-8=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGAGCTGGCCATGAGA
R:
GGGTGTCGGGTAGATCCAGAT
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]