DreEX0032419 @ danRer10
Exon Skipping
Gene
ENSDARG00000009745 | fbxw2
Description
F-box and WD repeat domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050522-303]
Coordinates
chr5:31783250-31791464:-
Coord C1 exon
chr5:31790955-31791464
Coord A exon
chr5:31783511-31783705
Coord C2 exon
chr5:31783250-31783383
Length
195 bp
Sequences
Splice sites
3' ss Seq
CACTGATTATTTTCCCTCAGGTT
3' ss Score
8.94
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
TCATGTGCCCATGGAGAAGGTGGCTTTTGAGGGGTGGCTGGAGTCAGTTTCCACCTCCTTCCTGGTGCTAAGTGACCAGCAGCGCAACCAAACCCTGGACCACCTCATCTCACTGAGCGGTGCCGCCCAGCTGCGACACCTGTCCAATGGCCTGGAAGCACTGCTCAAGCGGGATTTTCTGCGCCTGCTGCCGTTAGAGTTGGCCTTCTACCTGCTGCGCTGGCTGGACCCCCAGACCCTGCTCACCTGCTGTCTAGTGTGCAAGCAGTGGAATAAGGTGATCAATGGCTGTACTGAAGTGTGGCAGAGTGTGTGTCGAGACCTTGGCTGGCGCATCGATGAGTCCATTCAGGACGCTAGACACTGGAAGGTAATATATCTGAAGGCCAAACTGCGCATGAAGCAGCTGAGGGAGGAGGATGCGTTTGAAACCAGCTCTCTCATTGGACACAGTGCTCGAGTATATGCTCTTTACTACCGGGATGGGCTCCTCTGCACAG
Seq A exon
GTTCTGATGACCTGTCAGCCAAACTATGGGATGTCCGCACAGGCCAGTGTGTCTATGGCATCCAGACCCACACCTGTGCCACTGTCAAATTTGATGAGCAGAAACTGGTGACTGGGTCTTTTGATAACACCATTGCATGTTGGGAATGGAGCACTGGTGCCAAAATCCAGCAGTTTCGAGGACATACTGGGGCAG
Seq C2 exon
TGTTCAGCATAGACTACAATGATGAGTTGGACACCCTGGTCAGCGGCTCTGCAGACTTCACTGTCAAAGTATGGTCCCTTTCTGCAGGAACGTGTGTCAACACTCTTACTGGACACACAGAGTGGGTCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009745-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
A:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
C2:
PF0040027=WD40=PD(64.1=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTACTGAAGTGTGGCAG
R:
ACCAGGGTGTCCAACTCATCA
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]