GgaEX6015675 @ galGal3
Exon Skipping
Gene
ENSGALG00000000864 | Q5ZK75_CHICK
Description
NA
Coordinates
chr17:11108805-11111893:-
Coord C1 exon
chr17:11111384-11111893
Coord A exon
chr17:11109662-11109856
Coord C2 exon
chr17:11108805-11108938
Length
195 bp
Sequences
Splice sites
3' ss Seq
CATGTTGTTTTATATTCCAGGAT
3' ss Score
10.09
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCATAACCTTATGGAGAAAAAGGACTTTGAAGCATGGCTTGATAACATTTCTATTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGATCACCTGATTAGCTTGAGTGGAGCAGTCCAGCTCAGGCATCTCTCCAATAATCTAGAGATTCTTCTCAAGAGGGACTTCCTCAAACTTCTCCCACTGGAACTTAGTTTTTATCTGTTAAAATGGCTTGATCCTCACACCTTACTCACATGTTGCCTCGTCTCTAAGCAGTGGAATAAGGTTATAAGTGCCTGTACAGAGGTGTGGCAAACTGCATGTAAGAATTTGGGTTGGCAAATAGATGACTCTGTTCAGGATCCTCTGCATTGGAAGAAGGTTTACCTAAAGGCTATTTTAAGGATGAAGCAACTGAAGGACCATGAAGCCTTTGAGACATCCTCTTTAATTGGACACAGTGCCAGAGTATATGCACTTTACTATAGAGATGGTCTTCTGTGCACAG
Seq A exon
GATCAGATGACTTGTCTGCAAAACTGTGGGATGTAAGCACAGGTCAGTGCATCTATGGTATCCAGACACACACTTGTGCTACAGTGAAGTTTGATGAACAAAAACTTGTAACGGGCTCTTTTGATAACACAGTAGCCTGTTGGGAATGGAGCTCTGGGGCAAAGACACAGCATTTCAGAGGACACACTGGTGCAG
Seq C2 exon
TTTTTAGTGTGGACTACAATGATGAACTTGATGTTCTAGTCAGTGGCTCTGCAGACTTCACTGTGAAAGTGTGGGCCTTATCAACAGGAACGTGCCTGAATACCCTTACTGGACACACAGAATGGGTCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
A:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
C2:
PF0040027=WD40=PD(64.1=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGTTCAGGATCCTCTGCA
R:
ACGTTCCTGTTGATAAGGCCC
Band lengths:
252-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]