RnoEX0035459 @ rn6
Exon Skipping
Gene
ENSRNOG00000018687 | Fbxw2
Description
F-box and WD repeat domain containing 2 [Source:RGD Symbol;Acc:1310460]
Coordinates
chr3:13879426-13892232:-
Coord C1 exon
chr3:13891723-13892232
Coord A exon
chr3:13881365-13881559
Coord C2 exon
chr3:13879426-13879559
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCTGGTTTTTCTCTTCAAGGGT
3' ss Score
8.8
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
Exon sequences
Seq C1 exon
CCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGACCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGGAGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGATCCTCAGACTTTGCTCACATGCTGCCTGGTCTCTAAGCAGTGGAATAAGGTGATAAGTGCCTGCACAGAGGTGTGGCAGACTGCATGTAAAAATTTGGGCTGGCAAATAGATGATTCTGTTCAGGACGCATTGCACTGGAAGAAGGTTTACTTGAAGGCTATTTTGAGGATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCATTAATTGGACATAGTGCCAGAGTGTATGCACTTTACTACAAGGATGGACTTCTCTGTACAG
Seq A exon
GGTCAGATGATTTGTCTGCAAAGCTGTGGGATGTAAGCACAGGGCAGTGTGTTTACGGCATCCAGACCCACACTTGTGCAGCCGTGAAGTTCGATGAACAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGGCCTGCTGGGAATGGAGTTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACAGGGGCGG
Seq C2 exon
TGTTCAGTGTGGACTACAGTGATGAACTGGATATTTTGGTGAGTGGCTCTGCGGACTTCGCTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAACACACTCACTGGGCACACAGAATGGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018687-'5-15,'5-12,9-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
A:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
C2:
PF0040027=WD40=PD(64.1=55.6)
Main Skipping Isoform:
ENSRNOT00000025399fB5461
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTTCAGGACGCATTGCA
R:
TCAGGCATGTCCCAGCAGATA
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]