BtaEX0014403 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112063612-112078426:-
Coord C1 exon
chr8:112077917-112078426
Coord A exon
chr8:112069841-112070035
Coord C2 exon
chr8:112063612-112063698
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTTTTTCTCTTGAAGGGT
3' ss Score
10.57
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGATCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGACACCTCTCCAATAACCTGGAGACTCTGCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGACCCTCAGACGCTACTCACATGCTGCCTCGTCTCTAAACAGTGGAATAAGGTGATAAGTGCCTGCACGGAGGTGTGGCAGACCGCCTGTAAAAGTCTGGGCTGGCAGATAGATGATTCTGTTCAGGACGCTTTGCACTGGAAGAAGGTTTATTTGAAGGCTATTCTGAGAATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCTTTAATTGGACACAGTGCCAGAGTGTATGCACTTTACTACAAAGATGGACTTCTGTGTACAG
Seq A exon
GGTCAGACGACTTGTCTGCAAAGCTGTGGGATGTGAGCACAGGGCAGTGTGTTTATGGCATCCAGACCCACACTTGTGCTGCGGTGAAGTTTGATGAGCAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGGCCTGCTGGGAGTGGAGCTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACGGGGGCGG
Seq C2 exon
GTGGTCTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712_MULTIEX1-2/6=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
A:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGCCTGTAAAAGTCTGGG
R:
GGATGTAGTCTCCAGGGCTGT
Band lengths:
252-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development