BtaEX0014406 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112057391-112067875:-
Coord C1 exon
chr8:112067742-112067875
Coord A exon
chr8:112063612-112063698
Coord C2 exon
chr8:112057391-112058040
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGGATATGTATTATTTCTAGGTG
3' ss Score
8.08
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TGTTCAGTGTCGACTACAACGACGAACTGGACATCTTGGTGAGTGGCTCTGCAGACTTCACTGTCAAAGTGTGGGCTTTATCTGCTGGGACGTGCCTGAACACACTCACCGGGCACACAGAGTGGGTCACCAAG
Seq A exon
GTGGTCTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATCAAG
Seq C2 exon
GGTCATCAAGACTCCTGAGATAGCAAACCTGGCCTTGCTTGGCTTTGGAGACATCTTTGCCCTGCTGTTTGACAACCGCTACCTGTATATCCTGGACTTGCGGACAGAGAGCCTGATTAGCCGCTGGCCTCTCCCCGAGTACAGGAAATCCAAGAGGGGCTCCAGCTTCCTGGCAGGCGAAGCATCCTGGCTGAACGGACTGGATGGGCACAACGACACGGGCTTGGTCTTTGCCACCAGCATGCCCGACCACAGCATCCACCTGGTGTTGTGGAAGGAGCACGGCTGACACCGTGAACCGCTCCGCCCGCTGACTTCGGGTGCCGGGGCTGCGGGTTTGGGGTGCAGCCTCTGTGGTAGCCGACTGCATGAACCAAAGTTCTCACCTCATGGTATCATCGCGCAGTGCACAATCATGTATCTGTTTGCGGGGGCCAGGGCTCGGGGCGGGGGCTCGTTCTGTTGACACACAGCACAGCAGGCTGGCGGGGTGCACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712_MULTIEX1-5/6=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(64.1=55.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000000956fB2750
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTTTATCTGCTGGGAC
R:
TAATCAGGCTCTCTGTCCGCA
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development