HsaEX6062783 @ hg19
Exon Skipping
Gene
ENSG00000119402 | FBXW2
Description
F-box and WD repeat domain containing 2 [Source:HGNC Symbol;Acc:13608]
Coordinates
chr9:123533626-123538933:-
Coord C1 exon
chr9:123538371-123538933
Coord A exon
chr9:123535032-123535118
Coord C2 exon
chr9:123533626-123533795
Length
87 bp
Sequences
Splice sites
3' ss Seq
AACATGGTTTACATTTGCAGGTA
3' ss Score
7.88
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGTATCAGAGTAGGACCATGTACGTTTTGTTTTCCTGCATAAATTAGATAAAGTATTGTGTAGTGTCAGGCAGGCAGTCCTAAGAAGGAATGCCATTATCTCCAACATTTGTTTTGCCTCTCACTGTAGCTACCACAAATAAAAGAGATTGTATTATTCCTAGGACTTTCCACCTTAGAATAATAAGCTATAATAGTAAGAATTTTGAAATAGTTTTATCAGAAAATTGCTAGTTGAATAGCATCATTCTTACGGTGTCTCTGGTTGGGAAATTATATAATTGGGGAAAATAAACATTATTGAACTCTATTATAAAAGACCCACTGACAGAGACATGTTTTAACTTTGTGTAATTATATGCACTAGTATTTAGCGTGGACTACAATGATGAACTGGATATCTTGGTGAGCGGCTCTGCAGACTTCACTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAACACACTCACCGGGCACACGGAATGGGTCACCAAG
Seq A exon
GTAGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGTCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATTAAG
Seq C2 exon
ATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTAAAGACATTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGCAAATACATTGTCTGTAGTTCAGCACTTGGTCTCTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119402-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(64.1=55.6),PF0040027=WD40=PU(31.9=33.3)
A:
PF0040027=WD40=FE(59.6=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGCAGACTTCACTGTG
R:
TGGCTGCAGGCAGATACTTCT
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)