DreEX0032420 @ danRer10
Exon Skipping
Gene
ENSDARG00000009745 | fbxw2
Description
F-box and WD repeat domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050522-303]
Coordinates
chr5:31781724-31783383:-
Coord C1 exon
chr5:31783250-31783383
Coord A exon
chr5:31783041-31783127
Coord C2 exon
chr5:31781724-31781893
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTCATCTGTGCTTATTTAGGTG
3' ss Score
10.65
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGTTCAGCATAGACTACAATGATGAGTTGGACACCCTGGTCAGCGGCTCTGCAGACTTCACTGTCAAAGTATGGTCCCTTTCTGCAGGAACGTGTGTCAACACTCTTACTGGACACACAGAGTGGGTCACTAAG
Seq A exon
GTGCACCTTCAGAAAAGCCAAGTGGAGTCCATGATGCACAGTCCTGGTGACTACATACTACTGAGTGTTGATAAATATGAAATAAAG
Seq C2 exon
GTGTGGCCTATAGGCCGTGAGATTAACTGCAAGTGCTTAAAAACTCTATCCGTGTCAGAAGACCGCAGTGTTTGCTTGCAGCCACGATTACAGTTTGATGGCCGGTACATTGTGTGTTGTTCGGACCTTGGCATATACCAGTGGGACTTCGCAAGCTTTGATGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009745_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(64.1=55.6)
A:
PF0040027=WD40=FE(60.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGGAACGTGTGTCAAC
R:
ACACACAATGTACCGGCCATC
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]