GgaEX0000880 @ galGal3
Exon Skipping
Gene
ENSGALG00000000864 | Q5ZK75_CHICK
Description
NA
Coordinates
chr17:11107421-11108938:-
Coord C1 exon
chr17:11108805-11108938
Coord A exon
chr17:11108101-11108187
Coord C2 exon
chr17:11107421-11107590
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATTACATCCTTCAATTACAGGTA
3' ss Score
9.3
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTTTTAGTGTGGACTACAATGATGAACTTGATGTTCTAGTCAGTGGCTCTGCAGACTTCACTGTGAAAGTGTGGGCCTTATCAACAGGAACGTGCCTGAATACCCTTACTGGACACACAGAATGGGTCACTAAG
Seq A exon
GTAGTTTTGCAGAAGTGCAAAGTCAAATCTCTTATGCATAGTCCTGGGGATTATATTCTTTTAAGTGCAGATAAGTATGAAATCAAG
Seq C2 exon
ATTTGGCCTATTGGAAGGGAAATAAACTGCAAGTGTTTAAAAACACTGTCTGTTTCTGAAGATCGCAGCATCTCTCTACAGCCCAGATTGCACTTTGATGGTAAATACATAGTGTGCAGTTCAGCACTAGGATTATACCAGTGGGATTTTGCCAGCTATGATATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(64.1=55.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGGCTCTGCAGACTTC
R:
TGGGCTGTAGAGAGATGCTGC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event