MmuEX6100738 @ mm9
Exon Skipping
Gene
ENSMUSG00000035949 | Fbxw2
Description
F-box and WD-40 domain protein 2 [Source:MGI Symbol;Acc:MGI:1353435]
Coordinates
chr2:34662798-34666636:-
Coord C1 exon
chr2:34666503-34666636
Coord A exon
chr2:34664034-34664120
Coord C2 exon
chr2:34662798-34662967
Length
87 bp
Sequences
Splice sites
3' ss Seq
AAAAATGTTTATGCTTGTAGGTG
3' ss Score
6.22
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGTTCAGTGTGGACTACAGTGATGAACTGGATATTTTGGTGAGTGGCTCTGCGGACTTCGCTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAATACACTCACTGGGCATACTGAATGGGTCACCAAG
Seq A exon
GTGGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATCAAG
Seq C2 exon
ATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTGAAGACACTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGAAAATACATTGTCTGTAGTTCAGCCCTGGGTCTGTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035949-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(64.1=55.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATACTGAATGGGTCACC
R:
CTGGCAAAGTCCCACTGGTAC
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: