GgaEX0000880 @ galGal4
Exon Skipping
Gene
ENSGALG00000000864 | FBXW2
Description
F-box/WD repeat-containing protein 2 [Source:RefSeq peptide;Acc:NP_001007843]
Coordinates
chr17:10378809-10380326:-
Coord C1 exon
chr17:10380193-10380326
Coord A exon
chr17:10379489-10379575
Coord C2 exon
chr17:10378809-10378978
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATTACATCCTTCAATTACAGGTA
3' ss Score
9.3
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTTTTAGTGTGGACTACAATGATGAACTTGATGTTCTAGTCAGTGGCTCTGCAGACTTCACTGTGAAAGTGTGGGCCTTATCAACAGGAACGTGCCTGAATACCCTTACTGGACACACAGAATGGGTCACTAAG
Seq A exon
GTAGTTTTGCAGAAGTGCAAAGTCAAATCTCTTATGCATAGTCCTGGGGATTATATTCTTTTAAGTGCAGATAAGTATGAAATCAAG
Seq C2 exon
ATTTGGCCTATTGGAAGGGAAATAAACTGCAAGTGTTTAAAAACACTGTCTGTTTCTGAAGATCGCAGCATCTCTCTACAGCCCAGATTGCACTTTGATGGTAAATACATAGTGTGCAGTTCAGCACTAGGATTATACCAGTGGGATTTTGCCAGCTATGATATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(64.1=55.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGGCTCTGCAGACTTC
R:
TGGGCTGTAGAGAGATGCTGC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]