HsaEX6062783 @ hg38
Exon Skipping
Gene
ENSG00000119402 | FBXW2
Description
F-box and WD repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:13608]
Coordinates
chr9:120771348-120776655:-
Coord C1 exon
chr9:120776093-120776655
Coord A exon
chr9:120772754-120772840
Coord C2 exon
chr9:120771348-120771517
Length
87 bp
Sequences
Splice sites
3' ss Seq
AACATGGTTTACATTTGCAGGTA
3' ss Score
7.88
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGTATCAGAGTAGGACCATGTACGTTTTGTTTTCCTGCATAAATTAGATAAAGTATTGTGTAGTGTCAGGCAGGCAGTCCTAAGAAGGAATGCCATTATCTCCAACATTTGTTTTGCCTCTCACTGTAGCTACCACAAATAAAAGAGATTGTATTATTCCTAGGACTTTCCACCTTAGAATAATAAGCTATAATAGTAAGAATTTTGAAATAGTTTTATCAGAAAATTGCTAGTTGAATAGCATCATTCTTACGGTGTCTCTGGTTGGGAAATTATATAATTGGGGAAAATAAACATTATTGAACTCTATTATAAAAGACCCACTGACAGAGACATGTTTTAACTTTGTGTAATTATATGCACTAGTATTTAGCGTGGACTACAATGATGAACTGGATATCTTGGTGAGCGGCTCTGCAGACTTCACTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAACACACTCACCGGGCACACGGAATGGGTCACCAAG
Seq A exon
GTAGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGTCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATTAAG
Seq C2 exon
ATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTAAAGACATTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGCAAATACATTGTCTGTAGTTCAGCACTTGGTCTCTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119402-'13-11,'13-10,16-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(64.1=55.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGCAGACTTCACTGTG
R:
TGGCTGCAGGCAGATACTTCT
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains