BtaEX0014407 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112057391-112063698:-
Coord C1 exon
chr8:112063612-112063698
Coord A exon
chr8:112062829-112062998
Coord C2 exon
chr8:112057391-112058040
Length
170 bp
Sequences
Splice sites
3' ss Seq
TAACTTTCTTTTATCTGTAGATT
3' ss Score
9.67
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGGTCTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATCAAG
Seq A exon
ATTTGGCCAATTGGGAGAGAAATTAACTGTAAGTGCTTAAAGACGCTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGCAAATACATTGTCTGTAGTTCGGCACTGGGCCTCTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
Seq C2 exon
GGTCATCAAGACTCCTGAGATAGCAAACCTGGCCTTGCTTGGCTTTGGAGACATCTTTGCCCTGCTGTTTGACAACCGCTACCTGTATATCCTGGACTTGCGGACAGAGAGCCTGATTAGCCGCTGGCCTCTCCCCGAGTACAGGAAATCCAAGAGGGGCTCCAGCTTCCTGGCAGGCGAAGCATCCTGGCTGAACGGACTGGATGGGCACAACGACACGGGCTTGGTCTTTGCCACCAGCATGCCCGACCACAGCATCCACCTGGTGTTGTGGAAGGAGCACGGCTGACACCGTGAACCGCTCCGCCCGCTGACTTCGGGTGCCGGGGCTGCGGGTTTGGGGTGCAGCCTCTGTGGTAGCCGACTGCATGAACCAAAGTTCTCACCTCATGGTATCATCGCGCAGTGCACAATCATGTATCTGTTTGCGGGGGCCAGGGCTCGGGGCGGGGGCTCGTTCTGTTGACACACAGCACAGCAGGCTGGCGGGGTGCACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCCTGGAGACTACATCC
R:
CAGTCCGTTCAGCCAGGATG
Band lengths:
252-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development