GgaEX0000881 @ galGal3
Exon Skipping
Gene
ENSGALG00000000864 | Q5ZK75_CHICK
Description
NA
Coordinates
chr17:11104041-11108187:-
Coord C1 exon
chr17:11108101-11108187
Coord A exon
chr17:11107421-11107590
Coord C2 exon
chr17:11104041-11105941
Length
170 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTTTCTAATTCTAGATT
3' ss Score
7.58
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTAGTTTTGCAGAAGTGCAAAGTCAAATCTCTTATGCATAGTCCTGGGGATTATATTCTTTTAAGTGCAGATAAGTATGAAATCAAG
Seq A exon
ATTTGGCCTATTGGAAGGGAAATAAACTGCAAGTGTTTAAAAACACTGTCTGTTTCTGAAGATCGCAGCATCTCTCTACAGCCCAGATTGCACTTTGATGGTAAATACATAGTGTGCAGTTCAGCACTAGGATTATACCAGTGGGATTTTGCCAGCTATGATATTGTCAG
Seq C2 exon
GGTTATCAAGACTTCTGACTTCTCAAATGTGTCCTTGCTAGGCTTTGGAGAGATATTTGCTCTACTGTTTGATAATAGATACCTGTATATAATGGACGTGAGGACAGAAGAACTGATAAGCCGCTGGCCTCTACCAGAGTATAGAAAATCAAAGAGAGGGTCAAGTTTTTTGGCTGGTGAAATGTCTTGGTTAAATGGACTAAATGGTCAAAACGATACAGGCTTGGTTTTTGCCACCAGTATGCCAGACCACAGTATCCATTTGGTGTTATGGAAAGAACATGGCTGAAAAGATTACATATGCAGAATCTTCAGGATTATATGGACTATCAGCAATGTGTCCATCAAATGAAACTTTGCATGAACCAAAGTTGCACATCTAATGGTATCATCATGCAATGCACAATCACTTGATTTTATTTCGGCATTTGGGAACGGATTGGTTTTGACATAATACAACAGAGCATGCTAATAGTATTCACCATTAAATTTCTCTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864-'8-9,'8-8,10-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTATGCATAGTCCTGGGGA
R:
ACCAAGACATTTCACCAGCCA
Band lengths:
251-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]